Reverse dependencies for bio Latest version of the following gems require bio
rbbt-sources 3.4.0
Data sources like PubMed, Entrez Gene, or Gene Ontology
227,495 Downloads
mspire 0.10.8.0
mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
215,948 Downloads
snp-search 2.12.0
Use the snp-search tool to create, import, manipulate and query your SNP database
126,021 Downloads
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
119,382 Downloads
bio-polyploid-tools 1.2.1
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
114,432 Downloads
bacterial-annotator 1.0.0
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
101,069 Downloads
protk 1.4.4
Commandline tools for proteomics
94,984 Downloads
parse_fasta 2.5.2
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
83,056 Downloads
bio-gadget 0.5.0
Gadgets for bioinformatics
81,437 Downloads
iroki 0.0.36
Command line app and library code for Iroki, a phylogenetic tree customization program.
76,175 Downloads
transrate 1.0.1
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
74,358 Downloads
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
73,349 Downloads
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
59,322 Downloads
ms-core 0.0.19
basic, shared functionality for mspire libraries.
54,380 Downloads
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
46,859 Downloads
crb-blast 0.6.9
See summary
45,436 Downloads
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
44,481 Downloads
wrnap 1.2.2
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
43,809 Downloads
bio-basespace-sdk 0.1.7
BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...
41,346 Downloads
full_lengther_next 1.0.6
FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
39,948 Downloads
bio-band 0.1.11
Data mining and machine learning algorithms for JRuby
37,472 Downloads
fasta_util 0.5.2
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
36,622 Downloads
genevalidatorapp 2.1.8
A Web App wrapper for GeneValidator, a program for validating gene predictions.
36,589 Downloads
rbfam 12.0.1.1
Light wrapper for RFam data in Ruby.
35,964 Downloads
genevalidator 2.1.5
The tool validates the input predicted genes and provides useful information (length va...
35,893 Downloads
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
31,379 Downloads
ulla 0.9.9.2
'ulla' is a program for calculating environment-specific substitution tables from user ...
30,317 Downloads
bio-faster 0.4.5
A fast parser for FastQ files
29,671 Downloads
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
29,434 Downloads
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
29,434 Downloads