Reverse dependencies for bio-logger Latest version of the following gems require bio-logger
bio-blastxmlparser 2.0.4
Fast big data BLAST XML parser and library; this libxml2 based version is 50x faster th...
56,555 Downloads
bio-maf 1.0.1
Multiple Alignment Format parser for BioRuby.
55,866 Downloads
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
48,449 Downloads
bio-table 1.0.0
Functions and tools for tranforming and changing tab delimited and comma separated tabl...
37,792 Downloads
bio-velvet 0.6.0
Parser to work with some file formats used in the velvet DNA assembler
28,553 Downloads
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
27,576 Downloads
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
26,637 Downloads
bio-commandeer 0.4.0
A dead simple method of running shell commands from within Ruby, by applying opinion
26,505 Downloads
bio-kmer_counter 0.1.2
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
25,906 Downloads
finishm 0.0.9
De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...
22,671 Downloads
divvy_proteomics 0.3.3
divvy up spectra from DTASelect files in a somewhat parsimonious way
20,738 Downloads
bio-velvet_underground 0.3.1
Bindings to some internals of the velvet assembler.
20,412 Downloads
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
18,301 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,953 Downloads
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13,704 Downloads
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12,834 Downloads
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
11,947 Downloads
bio-core 0.0.1
Bioruby core plugins
10,555 Downloads
bio-gag 0.1.0
bio-gag is a biogem for detecting and correcting a particular type of error that occurs...
9,760 Downloads
bio-hmmer3_report 0.1.0
Enables programmatic parsing of HMMER version 3 reports
9,021 Downloads
bio-express_beta_diversity 0.1.0
Interface for express beta diversity file formats
8,271 Downloads
bio-primer3 0.0.1.pre
Primer3-related Ruby code - wrappers, Boulder IO, etc.
2,899 Downloads