Reverse dependencies for bio Latest version of the following gems require bio
rbbt-sources 3.4.2
Data sources like PubMed, Entrez Gene, or Gene Ontology
244,301 Downloads
mspire 0.10.8.0
mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
232,935 Downloads
snp-search 2.12.0
Use the snp-search tool to create, import, manipulate and query your SNP database
133,354 Downloads
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
127,763 Downloads
bio-polyploid-tools 1.2.1
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
123,834 Downloads
bacterial-annotator 1.0.1
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
109,856 Downloads
protk 1.4.4
Commandline tools for proteomics
101,849 Downloads
parse_fasta 2.5.2
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
90,243 Downloads
bio-gadget 0.5.0
Gadgets for bioinformatics
86,218 Downloads
iroki 0.0.36
Command line app and library code for Iroki, a phylogenetic tree customization program.
83,562 Downloads
transrate 1.0.1
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
81,539 Downloads
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
78,768 Downloads
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
63,164 Downloads
ms-core 0.0.19
basic, shared functionality for mspire libraries.
58,198 Downloads
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
49,829 Downloads
crb-blast 0.6.9
See summary
49,610 Downloads
wrnap 1.2.2
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
47,955 Downloads
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
47,022 Downloads
full_lengther_next 1.0.6
FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
44,246 Downloads
bio-basespace-sdk 0.1.7
BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...
43,409 Downloads
bio-band 0.1.11
Data mining and machine learning algorithms for JRuby
40,485 Downloads
genevalidatorapp 2.1.8
A Web App wrapper for GeneValidator, a program for validating gene predictions.
40,198 Downloads
rbfam 12.0.1.1
Light wrapper for RFam data in Ruby.
39,808 Downloads
genevalidator 2.1.5
The tool validates the input predicted genes and provides useful information (length va...
39,379 Downloads
fasta_util 0.5.2
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
38,653 Downloads
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
33,892 Downloads
ulla 0.9.9.2
'ulla' is a program for calculating environment-specific substitution tables from user ...
32,930 Downloads
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
31,833 Downloads
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
31,833 Downloads
bio-faster 0.4.5
A fast parser for FastQ files
31,531 Downloads