Reverse dependencies for bio Latest version of the following gems require bio
rbbt-sources 3.4.2
Data sources like PubMed, Entrez Gene, or Gene Ontology
243,643 Downloads
mspire 0.10.8.0
mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
231,467 Downloads
snp-search 2.12.0
Use the snp-search tool to create, import, manipulate and query your SNP database
133,184 Downloads
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
127,318 Downloads
bio-polyploid-tools 1.2.1
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
123,369 Downloads
bacterial-annotator 1.0.1
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
109,537 Downloads
protk 1.4.4
Commandline tools for proteomics
101,506 Downloads
parse_fasta 2.5.2
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
90,003 Downloads
bio-gadget 0.5.0
Gadgets for bioinformatics
85,935 Downloads
iroki 0.0.36
Command line app and library code for Iroki, a phylogenetic tree customization program.
83,128 Downloads
transrate 1.0.1
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
81,077 Downloads
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
78,434 Downloads
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
62,889 Downloads
ms-core 0.0.19
basic, shared functionality for mspire libraries.
57,945 Downloads
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
49,667 Downloads
crb-blast 0.6.9
See summary
49,317 Downloads
wrnap 1.2.2
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
47,757 Downloads
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
46,842 Downloads
full_lengther_next 1.0.6
FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
44,016 Downloads
bio-basespace-sdk 0.1.7
BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...
43,250 Downloads
bio-band 0.1.11
Data mining and machine learning algorithms for JRuby
40,258 Downloads
genevalidatorapp 2.1.8
A Web App wrapper for GeneValidator, a program for validating gene predictions.
40,040 Downloads
rbfam 12.0.1.1
Light wrapper for RFam data in Ruby.
39,534 Downloads
genevalidator 2.1.5
The tool validates the input predicted genes and provides useful information (length va...
39,190 Downloads
fasta_util 0.5.2
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
38,578 Downloads
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
33,691 Downloads
ulla 0.9.9.2
'ulla' is a program for calculating environment-specific substitution tables from user ...
32,731 Downloads
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
31,653 Downloads
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
31,653 Downloads
bio-faster 0.4.5
A fast parser for FastQ files
31,422 Downloads