bioの被依存関係 以下のgemの最新版はbioを必要としています
rbbt-sources 3.4.2
Data sources like PubMed, Entrez Gene, or Gene Ontology
244,303 ダウンロード数
mspire 0.10.8.0
mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
232,935 ダウンロード数
snp-search 2.12.0
Use the snp-search tool to create, import, manipulate and query your SNP database
133,356 ダウンロード数
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
127,765 ダウンロード数
bio-polyploid-tools 1.2.1
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
123,835 ダウンロード数
bacterial-annotator 1.0.1
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
109,856 ダウンロード数
protk 1.4.4
Commandline tools for proteomics
101,849 ダウンロード数
parse_fasta 2.5.2
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
90,244 ダウンロード数
bio-gadget 0.5.0
Gadgets for bioinformatics
86,218 ダウンロード数
iroki 0.0.36
Command line app and library code for Iroki, a phylogenetic tree customization program.
83,562 ダウンロード数
transrate 1.0.1
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
81,539 ダウンロード数
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
78,768 ダウンロード数
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
63,167 ダウンロード数
ms-core 0.0.19
basic, shared functionality for mspire libraries.
58,198 ダウンロード数
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
49,829 ダウンロード数
crb-blast 0.6.9
See summary
49,610 ダウンロード数
wrnap 1.2.2
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
47,956 ダウンロード数
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
47,023 ダウンロード数
full_lengther_next 1.0.6
FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
44,246 ダウンロード数
bio-basespace-sdk 0.1.7
BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...
43,410 ダウンロード数
bio-band 0.1.11
Data mining and machine learning algorithms for JRuby
40,485 ダウンロード数
genevalidatorapp 2.1.8
A Web App wrapper for GeneValidator, a program for validating gene predictions.
40,199 ダウンロード数
rbfam 12.0.1.1
Light wrapper for RFam data in Ruby.
39,808 ダウンロード数
genevalidator 2.1.5
The tool validates the input predicted genes and provides useful information (length va...
39,379 ダウンロード数
fasta_util 0.5.2
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
38,653 ダウンロード数
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
33,892 ダウンロード数
ulla 0.9.9.2
'ulla' is a program for calculating environment-specific substitution tables from user ...
32,930 ダウンロード数
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
31,834 ダウンロード数
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
31,834 ダウンロード数
bio-faster 0.4.5
A fast parser for FastQ files
31,531 ダウンロード数