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Reverse dependencies for bio Latest version of the following gems require bio

rbbt-sources 3.4.2

Data sources like PubMed, Entrez Gene, or Gene Ontology

251,100 Downloads

mspire 0.10.8.0

mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...

239,259 Downloads

snp-search 2.12.0

Use the snp-search tool to create, import, manipulate and query your SNP database

135,602 Downloads

bio-samtools 2.6.2

Binder of samtools for ruby, on the top of FFI. This project was born from the need...

130,165 Downloads

bio-polyploid-tools 1.2.1

Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat

127,039 Downloads

bacterial-annotator 1.0.1

GEM to annotate bacterial genome sequence based on a reference genome and complete the ...

112,239 Downloads

protk 1.4.4

Commandline tools for proteomics

104,240 Downloads

parse_fasta 2.5.2

Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...

92,577 Downloads

bio-gadget 0.5.0

Gadgets for bioinformatics

87,799 Downloads

iroki 0.0.36

Command line app and library code for Iroki, a phylogenetic tree customization program.

85,467 Downloads

transrate 1.0.1

a library and command-line tool for quality assessment of de-novo transcriptome assemblies

83,892 Downloads

bio-ucsc-api 0.6.5

Ruby UCSC API: accessing the UCSC Genome Database using Ruby

80,207 Downloads

bio-svgenes 0.4.1

This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...

64,338 Downloads

ms-core 0.0.19

basic, shared functionality for mspire libraries.

59,489 Downloads

biointerchange 1.0.8

BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...

50,889 Downloads

crb-blast 0.6.9

See summary

50,731 Downloads

wrnap 1.2.2

A comprehensive wrapper w(RNA)pper for various RNA CLI programs.

49,012 Downloads

bio-gff3 0.9.1

GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...

47,944 Downloads

full_lengther_next 1.0.6

FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...

45,460 Downloads

bio-basespace-sdk 0.1.7

BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...

44,172 Downloads

genevalidatorapp 2.1.8

A Web App wrapper for GeneValidator, a program for validating gene predictions.

41,514 Downloads

bio-band 0.1.11

Data mining and machine learning algorithms for JRuby

41,492 Downloads

rbfam 12.0.1.1

Light wrapper for RFam data in Ruby.

41,125 Downloads

genevalidator 2.1.5

The tool validates the input predicted genes and provides useful information (length va...

40,376 Downloads

fasta_util 0.5.2

Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...

39,194 Downloads

bio-publisci 0.1.0

A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...

34,779 Downloads

ulla 0.9.9.2

'ulla' is a program for calculating environment-specific substitution tables from user ...

33,804 Downloads

bio-ngs 0.5.2

bio-ngs provides a framework for handling NGS data with BioRuby

32,631 Downloads

bio-faster 0.4.5

A fast parser for FastQ files

32,106 Downloads

sciruby-full 0.2.11

Scientific gems for Ruby. This is the full installation with rigid version constraints.

29,726 Downloads

Total downloads 822,401

For this version 18,820

Version Released:

License:

Ruby

Required Ruby Version: >= 0

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