Reverse dependencies for bio Latest version of the following gems require bio
bio-polymarker_db_batch 0.5.1
Server for polymarker. To be used with cron
26,477 Downloads
egor 0.9.0
'egor' is a program for calculating environment-specific substitution tables from user ...
25,575 Downloads
sciruby-full 0.2.11
Scientific gems for Ruby. This is the full installation with rigid version constraints.
25,183 Downloads
bio-tm_hmm 0.2.4
A bioruby plugin for interaction with the transmembrane predictor TMHMM
25,170 Downloads
bio-dbla-classifier 0.7.1
Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags
25,068 Downloads
bio-velvet 0.6.0
Parser to work with some file formats used in the velvet DNA assembler
25,013 Downloads
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
24,829 Downloads
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
24,232 Downloads
scaffolder 0.5.0
Turns scaffolded contigs and annotations into a genome.
23,418 Downloads
bio-kmer_counter 0.1.2
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
23,379 Downloads
scaffolder-test-helpers 0.4.1
Useful Helper methods and classes for testing scaffolder.
22,836 Downloads
bio-phyta 0.9.4
Pipeline to remove contaminations from EST libraries
22,532 Downloads
npsearch 2.1.8
Search for Neuropeptides based solely on the common neuropeptide markers (e.g. signal p...
21,365 Downloads
bio-sambamba 0.0.5
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
20,693 Downloads
bio-fasta_retrieve 0.0.7
Gem that helps to retrieve DNA sequence from UCSC
20,338 Downloads
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
20,143 Downloads
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
20,143 Downloads
finishm 0.0.9
De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...
19,443 Downloads
transfuse 0.5.0
See summary
19,191 Downloads
scaffolder-annotation-locator 0.2.0
Build a genome scaffold using scaffolder and a set of annotated contigs. This tool upda...
19,180 Downloads
semin-ulla 0.9.9.1
'ulla' is a program for calculating environment-specific substitution tables from user ...
19,071 Downloads
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
18,898 Downloads
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
18,898 Downloads
bio-isoelectric_point 0.1.3
A bioruby plugin for calculating the isoelectric point of a protein
18,652 Downloads
bio-nexml 1.1.0
This plugin reads, writes and generates NeXML
18,218 Downloads
bio-velvet_underground 0.3.1
Bindings to some internals of the velvet assembler.
18,071 Downloads
orf_finder 0.1.8
ORF Finder is a library that with a sequence of nucletotides it finds the all the p...
16,975 Downloads
genfrag 0.0.0.4
This is a development release. Some features are functional at this time. Genfrag allo...
16,824 Downloads
bio-cd-hit-report 0.1.0
A Ruby library for reading CD-HIT cluster reports
16,124 Downloads
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
15,783 Downloads