Reverse dependencies for bio Latest version of the following gems require bio
bio-polymarker_db_batch 0.5.1
Server for polymarker. To be used with cron
28.997 Downloads
sciruby-full 0.2.11
Scientific gems for Ruby. This is the full installation with rigid version constraints.
28.910 Downloads
bio-velvet 0.6.0
Parser to work with some file formats used in the velvet DNA assembler
27.732 Downloads
egor 0.9.0
'egor' is a program for calculating environment-specific substitution tables from user ...
27.394 Downloads
bio-tm_hmm 0.2.4
A bioruby plugin for interaction with the transmembrane predictor TMHMM
27.291 Downloads
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
26.859 Downloads
bio-dbla-classifier 0.7.1
Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags
26.714 Downloads
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
26.073 Downloads
bio-kmer_counter 0.1.2
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
25.310 Downloads
scaffolder 0.5.0
Turns scaffolded contigs and annotations into a genome.
25.205 Downloads
scaffolder-test-helpers 0.4.1
Useful Helper methods and classes for testing scaffolder.
24.789 Downloads
bio-phyta 0.9.4
Pipeline to remove contaminations from EST libraries
24.237 Downloads
npsearch 2.1.8
Search for Neuropeptides based solely on the common neuropeptide markers (e.g. signal p...
23.129 Downloads
transfuse 0.5.0
See summary
21.962 Downloads
bio-fasta_retrieve 0.0.7
Gem that helps to retrieve DNA sequence from UCSC
21.956 Downloads
bio-sambamba 0.0.5
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
21.941 Downloads
finishm 0.0.9
De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...
21.848 Downloads
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
21.072 Downloads
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
21.072 Downloads
semin-ulla 0.9.9.1
'ulla' is a program for calculating environment-specific substitution tables from user ...
20.917 Downloads
scaffolder-annotation-locator 0.2.0
Build a genome scaffold using scaffolder and a set of annotated contigs. This tool upda...
20.832 Downloads
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
20.243 Downloads
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
20.243 Downloads
bio-isoelectric_point 0.1.3
A bioruby plugin for calculating the isoelectric point of a protein
19.927 Downloads
bio-velvet_underground 0.3.1
Bindings to some internals of the velvet assembler.
19.811 Downloads
bio-nexml 1.1.0
This plugin reads, writes and generates NeXML
19.721 Downloads
orf_finder 0.1.8
ORF Finder is a library that with a sequence of nucletotides it finds the all the p...
18.647 Downloads
genfrag 0.0.0.4
This is a development release. Some features are functional at this time. Genfrag allo...
18.015 Downloads
cheripic 1.2.7
a library and commandline tool to pick causative mutation from bulks segregant sequencing
17.855 Downloads
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
17.651 Downloads