Reverse dependencies for bio Latest version of the following gems require bio
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
17,565 Downloads
bio-cd-hit-report 0.1.0
A Ruby library for reading CD-HIT cluster reports
17,465 Downloads
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
17,032 Downloads
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
16,669 Downloads
bio-graphics 1.4
Library for visualizing genomic regions
16,557 Downloads
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
16,528 Downloads
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
15,794 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,621 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,621 Downloads
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
15,476 Downloads
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
15,178 Downloads
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
15,134 Downloads
exodb 0.1.3
A library for exome sequencing data management
15,088 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,753 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,753 Downloads
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14,650 Downloads
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
14,245 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
14,108 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
14,108 Downloads
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
13,891 Downloads
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
13,744 Downloads
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13,445 Downloads
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
13,146 Downloads
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
13,026 Downloads
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12,684 Downloads
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12,604 Downloads
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
11,684 Downloads
mspire-sequest 0.2.7
reads .SRF, .SQT and supports conversions
11,366 Downloads
semin-egor 0.9.3
A new ESST generator
11,098 Downloads
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
11,003 Downloads