Reverse dependencies for bio Latest version of the following gems require bio
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
16,958 Downloads
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
16,907 Downloads
bio-graphics 1.4
Library for visualizing genomic regions
16,871 Downloads
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
16,099 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,879 Downloads
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
15,747 Downloads
exodb 0.1.3
A library for exome sequencing data management
15,437 Downloads
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
15,419 Downloads
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
15,400 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,985 Downloads
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14,867 Downloads
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
14,482 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
14,399 Downloads
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
14,188 Downloads
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
13,951 Downloads
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13,756 Downloads
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
13,413 Downloads
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
13,319 Downloads
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12,901 Downloads
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12,875 Downloads
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
11,979 Downloads
mspire-sequest 0.2.7
reads .SRF, .SQT and supports conversions
11,636 Downloads
semin-egor 0.9.3
A new ESST generator
11,333 Downloads
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
11,271 Downloads
bio-protparam 0.2.0
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
11,138 Downloads
bio-kb-illumina 0.1.0
Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's pack...
10,997 Downloads
bio-core 0.0.1
Bioruby core plugins
10,575 Downloads
bio-wolf_psort_wrapper 0.0.3
Enables the localisation predictor WoLF PSORT to be run locally. The algorithm is avail...
10,282 Downloads
bio-cnls_screenscraper 0.3.0
Programmatic interface to the cNLS nuclear localisation signal prediction software
10,137 Downloads
bio-mummer 0.2.1
Help for working with the output of the .delta files produced by nucmer and promer
10,099 Downloads