bio 的反向依赖 以下 Gem 的最新版本需要 bio
bio-cd-hit-report 0.1.0
A Ruby library for reading CD-HIT cluster reports
17,204 下载
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
17,025 下载
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
16,625 下载
bio-graphics 1.4
Library for visualizing genomic regions
16,262 下载
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
16,262 下载
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
16,120 下载
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
15,444 下载
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,341 下载
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,341 下载
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
15,121 下载
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
14,889 下载
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
14,835 下载
exodb 0.1.3
A library for exome sequencing data management
14,703 下载
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14,406 下载
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,399 下载
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,399 下载
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
14,054 下载
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
13,833 下载
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
13,833 下载
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
13,473 下载
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
13,445 下载
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13,029 下载
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
12,839 下载
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
12,627 下载
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12,459 下载
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12,341 下载
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
11,322 下载
semin-egor 0.9.3
A new ESST generator
10,983 下载
mspire-sequest 0.2.7
reads .SRF, .SQT and supports conversions
10,912 下载
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10,819 下载