Reverse dependencies for bio Latest version of the following gems require bio
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
16,774 Downloads
bio-graphics 1.4
Library for visualizing genomic regions
16,682 Downloads
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
16,669 Downloads
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
15,905 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,720 Downloads
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
15,586 Downloads
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
15,274 Downloads
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
15,254 Downloads
exodb 0.1.3
A library for exome sequencing data management
15,240 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,851 Downloads
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14,744 Downloads
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
14,342 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
14,200 Downloads
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
13,998 Downloads
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
13,828 Downloads
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13,571 Downloads
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
13,258 Downloads
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
13,142 Downloads
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12,774 Downloads
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12,711 Downloads
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
11,820 Downloads
mspire-sequest 0.2.7
reads .SRF, .SQT and supports conversions
11,489 Downloads
semin-egor 0.9.3
A new ESST generator
11,212 Downloads
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
11,092 Downloads
bio-protparam 0.2.0
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
11,049 Downloads
bio-kb-illumina 0.1.0
Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's pack...
10,871 Downloads
bio-core 0.0.1
Bioruby core plugins
10,471 Downloads
bio-wolf_psort_wrapper 0.0.3
Enables the localisation predictor WoLF PSORT to be run locally. The algorithm is avail...
10,204 Downloads
bio-cnls_screenscraper 0.3.0
Programmatic interface to the cNLS nuclear localisation signal prediction software
10,048 Downloads
bio-mummer 0.2.1
Help for working with the output of the .delta files produced by nucmer and promer
9,975 Downloads