Dépendances inversées pour bio Latest version of the following gems require bio
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
17 396 Téléchargements
bio-cd-hit-report 0.1.0
A Ruby library for reading CD-HIT cluster reports
17 393 Téléchargements
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
16 888 Téléchargements
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
16 552 Téléchargements
bio-graphics 1.4
Library for visualizing genomic regions
16 457 Téléchargements
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
16 400 Téléchargements
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
15 703 Téléchargements
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15 545 Téléchargements
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15 545 Téléchargements
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
15 379 Téléchargements
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
15 097 Téléchargements
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
15 043 Téléchargements
exodb 0.1.3
A library for exome sequencing data management
14 974 Téléchargements
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14 654 Téléchargements
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14 654 Téléchargements
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14 578 Téléchargements
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
14 191 Téléchargements
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
14 026 Téléchargements
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
14 026 Téléchargements
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
13 737 Téléchargements
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
13 654 Téléchargements
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13 312 Téléchargements
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
13 036 Téléchargements
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
12 891 Téléchargements
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12 618 Téléchargements
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12 536 Téléchargements
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
11 580 Téléchargements
mspire-sequest 0.2.7
reads .SRF, .SQT and supports conversions
11 210 Téléchargements
semin-egor 0.9.3
A new ESST generator
11 060 Téléchargements
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10 941 Téléchargements