Reverse dependencies for bio Latest version of the following gems require bio
bio-hmmer_model 0.0.2
Parse PFAM HMM definition files so that the models can be accessible programmatically
9,710 Downloads
bio-gag 0.1.0
bio-gag is a biogem for detecting and correcting a particular type of error that occurs...
9,675 Downloads
ezgff 0.0.6
Utilities for GFF3, the genome annotation format. Useful to explore the gene model feat...
9,393 Downloads
qu-utils 1.0.3
Useful class or methods used in qu-* projects.
9,359 Downloads
sylfy 0.1.0
Systems Biology Library for Ruby
9,233 Downloads
ensemblrest 1.1.1
Ensembl REST Ruby API
9,024 Downloads
mizlab 0.1.7
The tools for our laboratory
8,985 Downloads
bio-hmmer3_report 0.1.0
Enables programmatic parsing of HMMER version 3 reports
8,920 Downloads
bio-old-biofetch-emulator 1.0.0
Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server w...
8,909 Downloads
bio-shell 1.0.1
BioRuby Shell is a command line interface on BioRuby open source bioinformatics library...
8,746 Downloads
bio-statsample-glm 0.1.1
Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This...
8,694 Downloads
bio-gggenome 0.2.0
A Ruby client for GGGenome the Ultrafast sequence search
8,610 Downloads
bio-ensembl-rest 0.2.0
A Ruby library for the RESTful Ensembl API.
8,522 Downloads
bio-ipcress 0.1.0
a programmatic interface to the iPCRess in-silico PCR software. iPCRess is part of the ...
8,426 Downloads
bio-cigar 0.1.0
A parser for CIGAR format alignments.
8,270 Downloads
bio-express_beta_diversity 0.1.0
Interface for express beta diversity file formats
8,208 Downloads
neurohmmer 0.1.2
Identify Neuropeptides using powerful Hidden Markov Models. For further information p...
8,039 Downloads
bio-samtools-server 0.1.2
A minimal web service on the top of sinatra to query bam files
7,951 Downloads
bio-nwk 0.1.4
Some codes for parsing newick tree
7,918 Downloads
ruby-band 0.1.13
Data mining and machine learning algorithms for JRuby
7,751 Downloads
bio-gfastqc 0.0.4
Bioinformatics. Aggregate FastQC (quality control for Next Generation Sequencing -NGS-)...
7,123 Downloads
bio-pangenome 0.1.3
Tools to find similarity between pangenomes.
7,120 Downloads
bio-executables 1.0.0
BioRuby executables is a collection of miscellaneous utilities for bioinformatics that ...
6,759 Downloads
bio-sge 0.0.0
Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...
6,246 Downloads
bio-hello 0.0.0
Encode any message string into a DNA sequence
6,150 Downloads
bio-emboss_six_frame_nucleotide_sequences 0.1.0
a method to get the nucleotide sequence of translations done by the EMBOSS bioinformati...
6,040 Downloads
bio-restriction_enzyme 1.0.0
Digests DNA based on restriction enzyme cut patterns
6,012 Downloads
bio-exportpred 0.0.1
Wrapper around the ExportPred algorithm for predicting P. falciparum exported proteins....
5,980 Downloads
dna_sequence_aligner 0.0.2
does high pairwise alignment of sequencing reads with a template using bioruby and clus...
5,898 Downloads
bio-biolinux 0.1.0
Meta package for BioLinux distribution: bio-core, bio-core-ext
5,885 Downloads