Reverse dependencies for bio Latest version of the following gems require bio
bio-core-ext 0.0.1
BioRuby plugins with dependecies from external library or tools
5,878 Downloads
bio-ensembl 1.1.0
This API provides a complete set of methods and classes to access the Ensembl database ...
5,862 Downloads
bio-hydropathy 0.0.1
Hydropathy scale for BioRuby
5,801 Downloads
bio-data-restriction_enzyme 1.109.0
Restriction Enzyme Dataset from REBASE in yaml form
5,792 Downloads
bio-dbsnp 0.1.1
decoding the dbSNP bitfield containg detaild information
5,788 Downloads
bio-aliphatic_index 0.0.1
A simple biogem that allows computation of the aliphatic index of a protein
5,778 Downloads
bio-phyloxml 0.9.0
Provides PhyloXML support for BioRuby.
5,758 Downloads
bio-foo 0.0.0
longer description of your gem
5,696 Downloads
bio-blast_seq_extract 0.2.5
Extract the sequence of the subjects' region based on blast search.
5,530 Downloads
bio-stockholm 0.0.1
Parses stockholm sequence alignment format
5,474 Downloads
bio-img_metadata 0.0.1
Reads metadata from Integrated Microbial Genomes (IMG) metadata files into a programmat...
5,357 Downloads
bio-raxml 0.1.0
Just a test
5,001 Downloads
rubst 0.0.1
Rewrite of Kenji's subst (http://www-cryst.bioc.cam.ac.uk/~kenji/subst/) in Ruby progra...
4,809 Downloads
bioruby-phyloxml 1.0.0
Provides PhyloXML support for BioRuby. This bioruby-phyloxml gem replaces old unmaintai...
4,588 Downloads
bio-location-rdfize 0.0.0
This is a BioRuby plugin providing FALDO location RDF output method for Bio::Location o...
4,549 Downloads
bio-faidx 0.0.1
ools to work with fasta files, indexed with samtools. The initial releases depend on bi...
4,482 Downloads
bio-blat-tools 0.1.0
Tools to manipulate blat files from the command line. Uses the Bio::Blat object from Bi...
4,358 Downloads
genomichdt 0.0.1
A Sinatra RESTful web-service for sharing RDFized genomic data.
4,348 Downloads
bio-kallisto 0.1.0
Basic wrapper for the Kallistio Mapper
4,251 Downloads
bio-jaspar 0.1.0
Basic tools for parsing, searching, and comparing JASPAR motifs; Based on Bio.motifs mo...
3,999 Downloads
bio-plates 0.2.0
Methods for handling multiwell plate annotations, includes ranges and quadrants
3,796 Downloads
jandot-ruby-ucsc-api 0.9
ruby-ucsc-api provides a ruby API to the UCSC databases (http://genome.ucsc.edu)
3,796 Downloads
jandot-ruby-ensembl-api 0.9.2
ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
3,790 Downloads
bio-sam-mutation 0.4.1
Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for c...
3,760 Downloads
iroki_lib 0.0.1
Library code for Iroki, a phylogenetic tree customization program.
3,707 Downloads
bio-biosql 0.0.0
Provides BioSQL support for BioRuby.
3,590 Downloads
bio-blast-xmlparser 0.0.0
BioRuby BLAST XMLParser plugin: a plugin of BioRuby BLAST XML result parser by using th...
3,519 Downloads
Microhomology 0.1.0
Simultaneously perform custom microhomoly strategies for genetic engineering and bioinf...
3,486 Downloads
geni-svgenes 1.1.0
Modified version of the bio-svgenes gem, for use in https://geni-act.org education webs...
3,303 Downloads
bio-iqtree 0.1.2
Phylogenetic analysis using IQ-Tree via BioRuby
3,147 Downloads