Reverse dependencies for bio Latest version of the following gems require bio
bio-core-ext 0.0.1
BioRuby plugins with dependecies from external library or tools
5,931 Downloads
bio-ensembl 1.1.0
This API provides a complete set of methods and classes to access the Ensembl database ...
5,919 Downloads
bio-hydropathy 0.0.1
Hydropathy scale for BioRuby
5,850 Downloads
bio-dbsnp 0.1.1
decoding the dbSNP bitfield containg detaild information
5,841 Downloads
bio-aliphatic_index 0.0.1
A simple biogem that allows computation of the aliphatic index of a protein
5,838 Downloads
bio-data-restriction_enzyme 1.109.0
Restriction Enzyme Dataset from REBASE in yaml form
5,836 Downloads
bio-phyloxml 0.9.0
Provides PhyloXML support for BioRuby.
5,818 Downloads
bio-foo 0.0.0
longer description of your gem
5,750 Downloads
bio-blast_seq_extract 0.2.5
Extract the sequence of the subjects' region based on blast search.
5,586 Downloads
bio-stockholm 0.0.1
Parses stockholm sequence alignment format
5,569 Downloads
bio-img_metadata 0.0.1
Reads metadata from Integrated Microbial Genomes (IMG) metadata files into a programmat...
5,410 Downloads
bio-raxml 0.1.0
Just a test
5,057 Downloads
rubst 0.0.1
Rewrite of Kenji's subst (http://www-cryst.bioc.cam.ac.uk/~kenji/subst/) in Ruby progra...
4,847 Downloads
bioruby-phyloxml 1.0.0
Provides PhyloXML support for BioRuby. This bioruby-phyloxml gem replaces old unmaintai...
4,662 Downloads
bio-location-rdfize 0.0.0
This is a BioRuby plugin providing FALDO location RDF output method for Bio::Location o...
4,623 Downloads
bio-faidx 0.0.1
ools to work with fasta files, indexed with samtools. The initial releases depend on bi...
4,538 Downloads
genomichdt 0.0.1
A Sinatra RESTful web-service for sharing RDFized genomic data.
4,445 Downloads
bio-blat-tools 0.1.0
Tools to manipulate blat files from the command line. Uses the Bio::Blat object from Bi...
4,412 Downloads
bio-kallisto 0.1.0
Basic wrapper for the Kallistio Mapper
4,348 Downloads
bio-jaspar 0.1.0
Basic tools for parsing, searching, and comparing JASPAR motifs; Based on Bio.motifs mo...
4,044 Downloads
bio-plates 0.2.0
Methods for handling multiwell plate annotations, includes ranges and quadrants
3,841 Downloads
jandot-ruby-ucsc-api 0.9
ruby-ucsc-api provides a ruby API to the UCSC databases (http://genome.ucsc.edu)
3,824 Downloads
jandot-ruby-ensembl-api 0.9.2
ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
3,824 Downloads
bio-sam-mutation 0.4.1
Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for c...
3,806 Downloads
iroki_lib 0.0.1
Library code for Iroki, a phylogenetic tree customization program.
3,755 Downloads
bio-biosql 0.0.0
Provides BioSQL support for BioRuby.
3,666 Downloads
bio-blast-xmlparser 0.0.0
BioRuby BLAST XMLParser plugin: a plugin of BioRuby BLAST XML result parser by using th...
3,590 Downloads
Microhomology 0.1.0
Simultaneously perform custom microhomoly strategies for genetic engineering and bioinf...
3,529 Downloads
geni-svgenes 1.1.0
Modified version of the bio-svgenes gem, for use in https://geni-act.org education webs...
3,339 Downloads
bio-qtlHD 0.0.1.alpha.1
Ruby tools and scripts for QTL mapping, part of the qtlHD project
3,192 Downloads