bioの被依存関係 以下のgemの最新版はbioを必要としています
rbbt-sources 3.4.2
Data sources like PubMed, Entrez Gene, or Gene Ontology
243,968 ダウンロード数
mspire 0.10.8.0
mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
232,433 ダウンロード数
snp-search 2.12.0
Use the snp-search tool to create, import, manipulate and query your SNP database
133,294 ダウンロード数
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
127,587 ダウンロード数
bio-polyploid-tools 1.2.1
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
123,579 ダウンロード数
bacterial-annotator 1.0.1
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
109,666 ダウンロード数
protk 1.4.4
Commandline tools for proteomics
101,728 ダウンロード数
parse_fasta 2.5.2
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
90,132 ダウンロード数
bio-gadget 0.5.0
Gadgets for bioinformatics
86,091 ダウンロード数
iroki 0.0.36
Command line app and library code for Iroki, a phylogenetic tree customization program.
83,419 ダウンロード数
transrate 1.0.1
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
81,395 ダウンロード数
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
78,641 ダウンロード数
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
63,058 ダウンロード数
ms-core 0.0.19
basic, shared functionality for mspire libraries.
58,104 ダウンロード数
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
49,749 ダウンロード数
crb-blast 0.6.9
See summary
49,514 ダウンロード数
wrnap 1.2.2
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
47,878 ダウンロード数
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
46,940 ダウンロード数
full_lengther_next 1.0.6
FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
44,159 ダウンロード数
bio-basespace-sdk 0.1.7
BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...
43,344 ダウンロード数
bio-band 0.1.11
Data mining and machine learning algorithms for JRuby
40,384 ダウンロード数
genevalidatorapp 2.1.8
A Web App wrapper for GeneValidator, a program for validating gene predictions.
40,126 ダウンロード数
rbfam 12.0.1.1
Light wrapper for RFam data in Ruby.
39,724 ダウンロード数
genevalidator 2.1.5
The tool validates the input predicted genes and provides useful information (length va...
39,310 ダウンロード数
fasta_util 0.5.2
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
38,618 ダウンロード数
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
33,793 ダウンロード数
ulla 0.9.9.2
'ulla' is a program for calculating environment-specific substitution tables from user ...
32,867 ダウンロード数
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
31,754 ダウンロード数
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
31,754 ダウンロード数
bio-faster 0.4.5
A fast parser for FastQ files
31,475 ダウンロード数