Reverse dependencies for bio Latest version of the following gems require bio
rbbt-sources 3.4.2
Data sources like PubMed, Entrez Gene, or Gene Ontology
243,653 Downloads
mspire 0.10.8.0
mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
231,538 Downloads
snp-search 2.12.0
Use the snp-search tool to create, import, manipulate and query your SNP database
133,189 Downloads
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
127,339 Downloads
bio-polyploid-tools 1.2.1
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
123,380 Downloads
bacterial-annotator 1.0.1
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
109,545 Downloads
protk 1.4.4
Commandline tools for proteomics
101,523 Downloads
parse_fasta 2.5.2
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
90,012 Downloads
bio-gadget 0.5.0
Gadgets for bioinformatics
85,943 Downloads
iroki 0.0.36
Command line app and library code for Iroki, a phylogenetic tree customization program.
83,142 Downloads
transrate 1.0.1
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
81,111 Downloads
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
78,443 Downloads
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
62,902 Downloads
ms-core 0.0.19
basic, shared functionality for mspire libraries.
57,960 Downloads
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
49,672 Downloads
crb-blast 0.6.9
See summary
49,325 Downloads
wrnap 1.2.2
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
47,767 Downloads
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
46,848 Downloads
full_lengther_next 1.0.6
FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
44,033 Downloads
bio-basespace-sdk 0.1.7
BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...
43,258 Downloads
bio-band 0.1.11
Data mining and machine learning algorithms for JRuby
40,268 Downloads
genevalidatorapp 2.1.8
A Web App wrapper for GeneValidator, a program for validating gene predictions.
40,048 Downloads
rbfam 12.0.1.1
Light wrapper for RFam data in Ruby.
39,548 Downloads
genevalidator 2.1.5
The tool validates the input predicted genes and provides useful information (length va...
39,199 Downloads
fasta_util 0.5.2
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
38,583 Downloads
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
33,696 Downloads
ulla 0.9.9.2
'ulla' is a program for calculating environment-specific substitution tables from user ...
32,745 Downloads
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
31,662 Downloads
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
31,662 Downloads
bio-faster 0.4.5
A fast parser for FastQ files
31,425 Downloads