Reverse dependencies for bio Latest version of the following gems require bio
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
17,388 Downloads
bio-cd-hit-report 0.1.0
A Ruby library for reading CD-HIT cluster reports
17,384 Downloads
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
16,880 Downloads
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
16,535 Downloads
bio-graphics 1.4
Library for visualizing genomic regions
16,451 Downloads
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
16,390 Downloads
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
15,698 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,533 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,533 Downloads
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
15,367 Downloads
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
15,090 Downloads
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
15,028 Downloads
exodb 0.1.3
A library for exome sequencing data management
14,963 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,642 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,642 Downloads
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14,571 Downloads
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
14,191 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
14,020 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
14,020 Downloads
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
13,729 Downloads
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
13,644 Downloads
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13,298 Downloads
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
13,029 Downloads
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
12,880 Downloads
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12,613 Downloads
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12,529 Downloads
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
11,567 Downloads
mspire-sequest 0.2.7
reads .SRF, .SQT and supports conversions
11,194 Downloads
semin-egor 0.9.3
A new ESST generator
11,059 Downloads
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10,938 Downloads