Dépendances inversées pour bio Latest version of the following gems require bio
sciruby-full 0.2.11
Scientific gems for Ruby. This is the full installation with rigid version constraints.
29 211 Téléchargements
bio-polymarker_db_batch 0.5.1
Server for polymarker. To be used with cron
29 073 Téléchargements
bio-velvet 0.6.0
Parser to work with some file formats used in the velvet DNA assembler
27 871 Téléchargements
egor 0.9.0
'egor' is a program for calculating environment-specific substitution tables from user ...
27 458 Téléchargements
bio-tm_hmm 0.2.4
A bioruby plugin for interaction with the transmembrane predictor TMHMM
27 406 Téléchargements
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
26 948 Téléchargements
bio-dbla-classifier 0.7.1
Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags
26 746 Téléchargements
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
26 136 Téléchargements
bio-kmer_counter 0.1.2
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
25 401 Téléchargements
scaffolder 0.5.0
Turns scaffolded contigs and annotations into a genome.
25 245 Téléchargements
scaffolder-test-helpers 0.4.1
Useful Helper methods and classes for testing scaffolder.
24 902 Téléchargements
bio-phyta 0.9.4
Pipeline to remove contaminations from EST libraries
24 317 Téléchargements
npsearch 2.1.8
Search for Neuropeptides based solely on the common neuropeptide markers (e.g. signal p...
23 167 Téléchargements
transfuse 0.5.0
See summary
22 064 Téléchargements
finishm 0.0.9
De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...
21 983 Téléchargements
bio-fasta_retrieve 0.0.7
Gem that helps to retrieve DNA sequence from UCSC
21 983 Téléchargements
bio-sambamba 0.0.5
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
21 948 Téléchargements
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
21 108 Téléchargements
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
21 108 Téléchargements
semin-ulla 0.9.9.1
'ulla' is a program for calculating environment-specific substitution tables from user ...
20 945 Téléchargements
scaffolder-annotation-locator 0.2.0
Build a genome scaffold using scaffolder and a set of annotated contigs. This tool upda...
20 922 Téléchargements
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
20 277 Téléchargements
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
20 277 Téléchargements
bio-isoelectric_point 0.1.3
A bioruby plugin for calculating the isoelectric point of a protein
19 967 Téléchargements
bio-velvet_underground 0.3.1
Bindings to some internals of the velvet assembler.
19 872 Téléchargements
bio-nexml 1.1.0
This plugin reads, writes and generates NeXML
19 787 Téléchargements
orf_finder 0.1.8
ORF Finder is a library that with a sequence of nucletotides it finds the all the p...
18 670 Téléchargements
genfrag 0.0.0.4
This is a development release. Some features are functional at this time. Genfrag allo...
18 055 Téléchargements
cheripic 1.2.7
a library and commandline tool to pick causative mutation from bulks segregant sequencing
17 919 Téléchargements
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
17 783 Téléchargements