bioの被依存関係 以下のgemの最新版はbioを必要としています
sciruby-full 0.2.11
Scientific gems for Ruby. This is the full installation with rigid version constraints.
29,414 ダウンロード数
bio-polymarker_db_batch 0.5.1
Server for polymarker. To be used with cron
29,174 ダウンロード数
bio-velvet 0.6.0
Parser to work with some file formats used in the velvet DNA assembler
27,998 ダウンロード数
egor 0.9.0
'egor' is a program for calculating environment-specific substitution tables from user ...
27,557 ダウンロード数
bio-tm_hmm 0.2.4
A bioruby plugin for interaction with the transmembrane predictor TMHMM
27,500 ダウンロード数
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
27,081 ダウンロード数
bio-dbla-classifier 0.7.1
Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags
26,846 ダウンロード数
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
26,233 ダウンロード数
bio-kmer_counter 0.1.2
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
25,492 ダウンロード数
scaffolder 0.5.0
Turns scaffolded contigs and annotations into a genome.
25,353 ダウンロード数
scaffolder-test-helpers 0.4.1
Useful Helper methods and classes for testing scaffolder.
25,031 ダウンロード数
bio-phyta 0.9.4
Pipeline to remove contaminations from EST libraries
24,461 ダウンロード数
npsearch 2.1.8
Search for Neuropeptides based solely on the common neuropeptide markers (e.g. signal p...
23,275 ダウンロード数
transfuse 0.5.0
See summary
22,173 ダウンロード数
finishm 0.0.9
De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...
22,109 ダウンロード数
bio-fasta_retrieve 0.0.7
Gem that helps to retrieve DNA sequence from UCSC
22,036 ダウンロード数
bio-sambamba 0.0.5
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
22,000 ダウンロード数
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
21,167 ダウンロード数
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
21,167 ダウンロード数
scaffolder-annotation-locator 0.2.0
Build a genome scaffold using scaffolder and a set of annotated contigs. This tool upda...
21,020 ダウンロード数
semin-ulla 0.9.9.1
'ulla' is a program for calculating environment-specific substitution tables from user ...
21,017 ダウンロード数
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
20,334 ダウンロード数
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
20,334 ダウンロード数
bio-isoelectric_point 0.1.3
A bioruby plugin for calculating the isoelectric point of a protein
20,066 ダウンロード数
bio-velvet_underground 0.3.1
Bindings to some internals of the velvet assembler.
19,942 ダウンロード数
bio-nexml 1.1.0
This plugin reads, writes and generates NeXML
19,885 ダウンロード数
orf_finder 0.1.8
ORF Finder is a library that with a sequence of nucletotides it finds the all the p...
18,730 ダウンロード数
genfrag 0.0.0.4
This is a development release. Some features are functional at this time. Genfrag allo...
18,126 ダウンロード数
cheripic 1.2.7
a library and commandline tool to pick causative mutation from bulks segregant sequencing
17,985 ダウンロード数
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
17,886 ダウンロード数