bio 的反向依賴 下列 Gems 的最新版本需要 bio
sciruby-full 0.2.11
Scientific gems for Ruby. This is the full installation with rigid version constraints.
29,422 下載
bio-polymarker_db_batch 0.5.1
Server for polymarker. To be used with cron
29,178 下載
bio-velvet 0.6.0
Parser to work with some file formats used in the velvet DNA assembler
28,002 下載
egor 0.9.0
'egor' is a program for calculating environment-specific substitution tables from user ...
27,557 下載
bio-tm_hmm 0.2.4
A bioruby plugin for interaction with the transmembrane predictor TMHMM
27,501 下載
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
27,090 下載
bio-dbla-classifier 0.7.1
Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags
26,846 下載
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
26,241 下載
bio-kmer_counter 0.1.2
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
25,502 下載
scaffolder 0.5.0
Turns scaffolded contigs and annotations into a genome.
25,365 下載
scaffolder-test-helpers 0.4.1
Useful Helper methods and classes for testing scaffolder.
25,033 下載
bio-phyta 0.9.4
Pipeline to remove contaminations from EST libraries
24,465 下載
npsearch 2.1.8
Search for Neuropeptides based solely on the common neuropeptide markers (e.g. signal p...
23,275 下載
transfuse 0.5.0
See summary
22,176 下載
finishm 0.0.9
De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...
22,118 下載
bio-fasta_retrieve 0.0.7
Gem that helps to retrieve DNA sequence from UCSC
22,036 下載
bio-sambamba 0.0.5
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
22,000 下載
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
21,171 下載
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
21,171 下載
semin-ulla 0.9.9.1
'ulla' is a program for calculating environment-specific substitution tables from user ...
21,027 下載
scaffolder-annotation-locator 0.2.0
Build a genome scaffold using scaffolder and a set of annotated contigs. This tool upda...
21,027 下載
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
20,336 下載
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
20,336 下載
bio-isoelectric_point 0.1.3
A bioruby plugin for calculating the isoelectric point of a protein
20,066 下載
bio-velvet_underground 0.3.1
Bindings to some internals of the velvet assembler.
19,943 下載
bio-nexml 1.1.0
This plugin reads, writes and generates NeXML
19,887 下載
orf_finder 0.1.8
ORF Finder is a library that with a sequence of nucletotides it finds the all the p...
18,730 下載
genfrag 0.0.0.4
This is a development release. Some features are functional at this time. Genfrag allo...
18,130 下載
cheripic 1.2.7
a library and commandline tool to pick causative mutation from bulks segregant sequencing
17,985 下載
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
17,887 下載