bio 的反向依賴 下列 Gems 的最新版本需要 bio
bio-cd-hit-report 0.1.0
A Ruby library for reading CD-HIT cluster reports
17,219 下載
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
17,142 下載
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
16,644 下載
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
16,296 下載
bio-graphics 1.4
Library for visualizing genomic regions
16,285 下載
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
16,148 下載
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
15,477 下載
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,364 下載
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
15,364 下載
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
15,153 下載
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
14,907 下載
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
14,856 下載
exodb 0.1.3
A library for exome sequencing data management
14,732 下載
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,431 下載
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,431 下載
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14,427 下載
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
14,066 下載
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
13,857 下載
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
13,857 下載
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
13,514 下載
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
13,469 下載
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13,067 下載
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
12,866 下載
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
12,664 下載
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12,478 下載
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12,361 下載
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
11,357 下載
semin-egor 0.9.3
A new ESST generator
10,990 下載
mspire-sequest 0.2.7
reads .SRF, .SQT and supports conversions
10,954 下載
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10,831 下載